J5_6GB2_003
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUCG*CU*AG*CGGAACAA
- Length
- 20 nucleotides
- Bulged bases
- 6GB2|1|BA|U|1071, 6GB2|1|BA|G|1252, 6GB2|1|BA|G|1253, 6GB2|1|BA|A|1254, 6GB2|1|BA|A|1257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6GB2_003 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.2952
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6GB2|1|BA|U|1069
6GB2|1|BA|U|1070
6GB2|1|BA|U|1071
6GB2|1|BA|A|1072
*
6GB2|1|BA|U|1143
6GB2|1|BA|U|1144
6GB2|1|BA|C|1145
6GB2|1|BA|G|1146
*
6GB2|1|BA|C|1158
6GB2|1|BA|U|1159
*
6GB2|1|BA|A|1181
6GB2|1|BA|G|1182
*
6GB2|1|BA|C|1251
6GB2|1|BA|G|1252
6GB2|1|BA|G|1253
6GB2|1|BA|A|1254
6GB2|1|BA|A|1255
6GB2|1|BA|C|1256
6GB2|1|BA|A|1257
6GB2|1|BA|A|1258
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain AV
- P-site fMet-tRNAMet, mitochondrial
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain B1
- Mitochondrial ribosomal protein L28
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BD
- Mitochondrial ribosomal protein L2
- Chain BP
- Mitochondrial ribosomal protein L15
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