J5_6GC0_006

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6GC0|1|A|U|1758, 6GC0|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GC0_006 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1007

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GC0|1|A|G|1674
6GC0|1|A|C|1675
6GC0|1|A|A|1676
6GC0|1|A|A|1677
6GC0|1|A|A|1678
6GC0|1|A|A|1679
6GC0|1|A|U|1680
6GC0|1|A|G|1681
6GC0|1|A|G|1682
*
6GC0|1|A|C|1706
6GC0|1|A|G|1707
*
6GC0|1|A|U|1751
6GC0|1|A|C|1752
*
6GC0|1|A|G|1756
6GC0|1|A|A|1757
6GC0|1|A|U|1758
6GC0|1|A|A|1759
6GC0|1|A|C|1760
6GC0|1|A|C|1761
6GC0|1|A|A|1762
6GC0|1|A|G|1763
6GC0|1|A|C|1764
*
6GC0|1|A|G|1988
6GC0|1|A|G|1989
6GC0|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19