J5_6GQ1_008

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

6GQ1|1|2|A|477, 6GQ1|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GQ1_008 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.224

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6GQ1|1|2|C|31
6GQ1|1|2|U|32
6GQ1|1|2|U|33
6GQ1|1|2|G|34
6GQ1|1|2|U|35
*
6GQ1|1|2|A|473
6GQ1|1|2|A|474
6GQ1|1|2|A|475
6GQ1|1|2|U|476
6GQ1|1|2|A|477
6GQ1|1|2|A|478
6GQ1|1|2|C|479
*
6GQ1|1|2|G|509
6GQ1|1|2|G|510
6GQ1|1|2|A|511
6GQ1|1|2|A|512
6GQ1|1|2|U|513
6GQ1|1|2|G|514
*
6GQ1|1|2|C|543
6GQ1|1|2|A|544
6GQ1|1|2|A|545
6GQ1|1|2|U|546
*
6GQ1|1|2|A|592
6GQ1|1|2|U|593
6GQ1|1|2|A|594
6GQ1|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain AU

40S ribosomal protein S30-A

Chain z

40S ribosomal protein S9-A