J5_6GSJ_003

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6GSJ|1|14|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GSJ_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0564

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6GSJ|1|14|C|47
6GSJ|1|14|G|48
6GSJ|1|14|A|49
6GSJ|1|14|U|50
6GSJ|1|14|G|51
6GSJ|1|14|A|52
6GSJ|1|14|A|53
6GSJ|1|14|G|54
*
6GSJ|1|14|C|116
6GSJ|1|14|G|117
6GSJ|1|14|A|118
6GSJ|1|14|A|119
6GSJ|1|14|U|120
6GSJ|1|14|G|121
*
6GSJ|1|14|C|130
6GSJ|1|14|G|131
*
6GSJ|1|14|C|148
6GSJ|1|14|A|149
6GSJ|1|14|C|150
*
6GSJ|1|14|G|176
6GSJ|1|14|G|177
6GSJ|1|14|G|178

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34