3D structure

PDB id
6GSL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
CAG*CGUGC*GAG*CA*UG
Length
15 nucleotides
Bulged bases
6GSL|1|14|A|532, 6GSL|1|14|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6GSL_005 not in the Motif Atlas
Homologous match to J5_9DFE_003
Geometric discrepancy: 0.0979
The information below is about J5_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6GSL|1|14|C|531
6GSL|1|14|A|532
6GSL|1|14|G|533
*
6GSL|1|14|C|560
6GSL|1|14|G|561
6GSL|1|14|U|562
6GSL|1|14|G|563
6GSL|1|14|C|564
*
6GSL|1|14|G|577
6GSL|1|14|A|578
6GSL|1|14|G|579
*
6GSL|1|14|C|1261
6GSL|1|14|A|1262
*
6GSL|1|14|U|2017
6GSL|1|14|G|2018

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 39
50S ribosomal protein L4
Chain 85
50S ribosomal protein L20
Chain 95
50S ribosomal protein L21
Chain A5
50S ribosomal protein L22
Chain J5
50S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1943 s