J5_6GSL_012

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6GSL|1|1H|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GSL_012 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0585

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6GSL|1|1H|C|47
6GSL|1|1H|G|48
6GSL|1|1H|A|49
6GSL|1|1H|U|50
6GSL|1|1H|G|51
6GSL|1|1H|A|52
6GSL|1|1H|A|53
6GSL|1|1H|G|54
*
6GSL|1|1H|C|116
6GSL|1|1H|G|117
6GSL|1|1H|A|118
6GSL|1|1H|A|119
6GSL|1|1H|U|120
6GSL|1|1H|G|121
*
6GSL|1|1H|C|130
6GSL|1|1H|G|131
*
6GSL|1|1H|C|148
6GSL|1|1H|A|149
6GSL|1|1H|C|150
*
6GSL|1|1H|G|176
6GSL|1|1H|G|177
6GSL|1|1H|G|178

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34