J5_6GZQ_001

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6GZQ|1|A1|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GZQ_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1634

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6GZQ|1|A1|C|46
6GZQ|1|A1|G|47
6GZQ|1|A1|A|48
6GZQ|1|A1|U|49
6GZQ|1|A1|G|50
6GZQ|1|A1|A|51
6GZQ|1|A1|A|52
6GZQ|1|A1|G|53
*
6GZQ|1|A1|C|114
6GZQ|1|A1|G|115
6GZQ|1|A1|A|116
6GZQ|1|A1|A|117
6GZQ|1|A1|U|118
6GZQ|1|A1|G|119
*
6GZQ|1|A1|C|128
6GZQ|1|A1|G|129
*
6GZQ|1|A1|C|148
6GZQ|1|A1|A|149
6GZQ|1|A1|C|150
*
6GZQ|1|A1|G|166
6GZQ|1|A1|G|167
6GZQ|1|A1|G|168

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain S1

50S ribosomal protein L23

Chain c1

50S ribosomal protein L34