3D structure

PDB id
6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUUA*UUUG*CG*CG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
6HA1|1|A|U|2105, 6HA1|1|A|G|2457, 6HA1|1|A|G|2458, 6HA1|1|A|A|2459, 6HA1|1|A|U|2460
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6HA1_007 not in the Motif Atlas
Homologous match to J5_9DFE_007
Geometric discrepancy: 0.0963
The information below is about J5_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.2
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6HA1|1|A|U|2103
6HA1|1|A|U|2104
6HA1|1|A|U|2105
6HA1|1|A|A|2106
*
6HA1|1|A|U|2272
6HA1|1|A|U|2273
6HA1|1|A|U|2274
6HA1|1|A|G|2275
*
6HA1|1|A|C|2287
6HA1|1|A|G|2288
*
6HA1|1|A|C|2310
6HA1|1|A|G|2311
*
6HA1|1|A|C|2456
6HA1|1|A|G|2457
6HA1|1|A|G|2458
6HA1|1|A|A|2459
6HA1|1|A|U|2460
6HA1|1|A|A|2461
6HA1|1|A|A|2462
6HA1|1|A|A|2463
6HA1|1|A|A|2464

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L33 1
Chain 3
50S ribosomal protein L35
Chain C
50S ribosomal protein L2
Chain L
50S ribosomal protein L15
Chain W
50S ribosomal protein L27
Chain X
50S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2236 s