J5_6HA1_007
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6HA1|1|A|U|2105, 6HA1|1|A|G|2457, 6HA1|1|A|G|2458, 6HA1|1|A|A|2459, 6HA1|1|A|U|2460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HA1_007 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0963
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HA1|1|A|U|2103
6HA1|1|A|U|2104
6HA1|1|A|U|2105
6HA1|1|A|A|2106
*
6HA1|1|A|U|2272
6HA1|1|A|U|2273
6HA1|1|A|U|2274
6HA1|1|A|G|2275
*
6HA1|1|A|C|2287
6HA1|1|A|G|2288
*
6HA1|1|A|C|2310
6HA1|1|A|G|2311
*
6HA1|1|A|C|2456
6HA1|1|A|G|2457
6HA1|1|A|G|2458
6HA1|1|A|A|2459
6HA1|1|A|U|2460
6HA1|1|A|A|2461
6HA1|1|A|A|2462
6HA1|1|A|A|2463
6HA1|1|A|A|2464
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33 1
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
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