J5_6HD7_006
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6HD7|1|1|G|2418, 6HD7|1|1|A|2799, 6HD7|1|1|G|2800, 6HD7|1|1|A|2801, 6HD7|1|1|A|2802, 6HD7|1|1|A|2803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HD7_006 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.2479
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HD7|1|1|U|2416
6HD7|1|1|U|2417
6HD7|1|1|G|2418
6HD7|1|1|A|2419
*
6HD7|1|1|U|2611
6HD7|1|1|U|2612
6HD7|1|1|U|2613
6HD7|1|1|G|2614
*
6HD7|1|1|C|2627
6HD7|1|1|A|2628
*
6HD7|1|1|U|2650
6HD7|1|1|G|2651
*
6HD7|1|1|C|2798
6HD7|1|1|A|2799
6HD7|1|1|G|2800
6HD7|1|1|A|2801
6HD7|1|1|A|2802
6HD7|1|1|A|2803
6HD7|1|1|A|2804
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 60S ribosomal protein L42-A
- Chain E
- 60S ribosomal protein L2-A
- Chain P
- 60S ribosomal protein L15-A
- Chain S
- 60S ribosomal protein L18-A
- Chain V
- 60S ribosomal protein L21-A
- Chain c
- 60S ribosomal protein L28
- Chain d
- 60S ribosomal protein L29
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