J5_6HRM_004
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 6HRM|1|1|A|2038, 6HRM|1|1|U|2068
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HRM_004 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0977
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HRM|1|1|C|2037
6HRM|1|1|A|2038
6HRM|1|1|G|2039
*
6HRM|1|1|C|2066
6HRM|1|1|G|2067
6HRM|1|1|U|2068
6HRM|1|1|A|2069
6HRM|1|1|C|2070
*
6HRM|1|1|G|2083
6HRM|1|1|G|2084
6HRM|1|1|G|2085
*
6HRM|1|1|C|2767
6HRM|1|1|A|2768
*
6HRM|1|1|U|3523
6HRM|1|1|G|3524
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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