J5_6HRM_006
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 6HRM|1|1|U|3264, 6HRM|1|1|G|3269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HRM_006 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0659
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HRM|1|1|G|3180
6HRM|1|1|C|3181
6HRM|1|1|A|3182
6HRM|1|1|A|3183
6HRM|1|1|A|3184
6HRM|1|1|A|3185
6HRM|1|1|U|3186
6HRM|1|1|G|3187
6HRM|1|1|G|3188
*
6HRM|1|1|C|3212
6HRM|1|1|G|3213
*
6HRM|1|1|U|3257
6HRM|1|1|C|3258
*
6HRM|1|1|G|3262
6HRM|1|1|A|3263
6HRM|1|1|U|3264
6HRM|1|1|A|3265
6HRM|1|1|C|3266
6HRM|1|1|C|3267
6HRM|1|1|A|3268
6HRM|1|1|G|3269
6HRM|1|1|C|3270
*
6HRM|1|1|G|3494
6HRM|1|1|G|3495
6HRM|1|1|C|3496
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
Coloring options: