J5_6I7O_007
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6I7O|1|2b|U|56, 6I7O|1|2b|A|93, 6I7O|1|2b|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6I7O_007 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.094
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6I7O|1|2b|C|54
6I7O|1|2b|A|55
6I7O|1|2b|U|56
6I7O|1|2b|G|57
*
6I7O|1|2b|C|90
6I7O|1|2b|G|91
6I7O|1|2b|A|92
6I7O|1|2b|A|93
6I7O|1|2b|U|94
6I7O|1|2b|G|95
6I7O|1|2b|G|96
6I7O|1|2b|C|97
*
6I7O|1|2b|G|386
6I7O|1|2b|A|387
6I7O|1|2b|G|388
*
6I7O|1|2b|C|409
6I7O|1|2b|A|410
6I7O|1|2b|C|411
*
6I7O|1|2b|G|422
6I7O|1|2b|G|423
6I7O|1|2b|C|424
6I7O|1|2b|A|425
6I7O|1|2b|G|426
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Sb
- 40S ribosomal protein S4-A
- Chain Tb
- 40S ribosomal protein S6-A
- Chain Vb
- 40S ribosomal protein S8-A
- Chain Wb
- 40S ribosomal protein S9-A
- Chain XB
- 60S ribosomal protein L23-A
- Chain db
- 40S ribosomal protein S24-A
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