J5_6I7O_019

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

6I7O|1|YQ|U|719, 6I7O|1|YQ|A|784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6I7O_019 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.1044

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_56629.1

Basepair signature

cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6I7O|1|YQ|C|675
6I7O|1|YQ|G|676
6I7O|1|YQ|A|677
6I7O|1|YQ|G|678
*
6I7O|1|YQ|C|702
6I7O|1|YQ|G|703
6I7O|1|YQ|U|704
6I7O|1|YQ|A|705
6I7O|1|YQ|A|706
*
6I7O|1|YQ|U|713
6I7O|1|YQ|G|714
6I7O|1|YQ|A|715
6I7O|1|YQ|A|716
6I7O|1|YQ|C|717
6I7O|1|YQ|G|718
6I7O|1|YQ|U|719
6I7O|1|YQ|A|720
6I7O|1|YQ|G|721
*
6I7O|1|YQ|C|749
6I7O|1|YQ|G|750
6I7O|1|YQ|A|751
*
6I7O|1|YQ|U|782
6I7O|1|YQ|A|783
6I7O|1|YQ|A|784
6I7O|1|YQ|G|785
6I7O|1|YQ|A|786
6I7O|1|YQ|G|787

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XC

60S ribosomal protein L36-A

Chain XJ

60S ribosomal protein L13-A

Chain XR

60S ribosomal protein L28

Chain XV

60S ribosomal protein L29

Chain YB

60S ribosomal protein L18-A

Chain YE

60S ribosomal protein L4-A