J5_6I7O_020
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6I7O|1|YQ|G|2116, 6I7O|1|YQ|G|2121
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6I7O_020 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0986
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6I7O|1|YQ|G|1906
6I7O|1|YQ|C|1907
6I7O|1|YQ|A|1908
6I7O|1|YQ|A|1909
6I7O|1|YQ|A|1910
6I7O|1|YQ|A|1911
6I7O|1|YQ|U|1912
6I7O|1|YQ|A|1913
6I7O|1|YQ|G|1914
*
6I7O|1|YQ|U|1938
6I7O|1|YQ|G|1939
*
6I7O|1|YQ|U|2109
6I7O|1|YQ|G|2110
*
6I7O|1|YQ|C|2114
6I7O|1|YQ|G|2115
6I7O|1|YQ|G|2116
6I7O|1|YQ|A|2117
6I7O|1|YQ|C|2118
6I7O|1|YQ|A|2119
6I7O|1|YQ|A|2120
6I7O|1|YQ|G|2121
6I7O|1|YQ|G|2122
*
6I7O|1|YQ|C|2331
6I7O|1|YQ|A|2332
6I7O|1|YQ|C|2333
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XB
- 60S ribosomal protein L23-A
- Chain XE
- 60S ribosomal protein L24-A
- Chain YA
- 60S ribosomal protein L3
- Chain YF
- 60S ribosomal protein L19-A
Coloring options: