J5_6I7V_017
3D structure
- PDB id
- 6I7V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosomal protein paralogs bL31 and bL36
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6I7V|1|DA|U|2076, 6I7V|1|DA|G|2428, 6I7V|1|DA|G|2429||A, 6I7V|1|DA|A|2430||A, 6I7V|1|DA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6I7V_017 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0882
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6I7V|1|DA|U|2074
6I7V|1|DA|U|2075
6I7V|1|DA|U|2076
6I7V|1|DA|A|2077
*
6I7V|1|DA|U|2243
6I7V|1|DA|U|2244
6I7V|1|DA|U|2245
6I7V|1|DA|G|2246
*
6I7V|1|DA|C|2258
6I7V|1|DA|U|2259
*
6I7V|1|DA|A|2281
6I7V|1|DA|G|2282
*
6I7V|1|DA|C|2427
6I7V|1|DA|G|2428
6I7V|1|DA|G|2429||A
6I7V|1|DA|A|2430||A
6I7V|1|DA|U|2431
6I7V|1|DA|A|2432
6I7V|1|DA|A|2433
6I7V|1|DA|A|2434
6I7V|1|DA|A|2435
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D2
- 50S ribosomal protein L33
- Chain D4
- 50S ribosomal protein L35
- Chain DC
- 50S ribosomal protein L2
- Chain DM
- 50S ribosomal protein L15
- Chain DX
- 50S ribosomal protein L27
- Chain DY
- 50S ribosomal protein L28
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