J5_6IP8_002
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 6IP8|1|1A|C|2289, 6IP8|1|1A|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6IP8_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.1084
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|G|1335
6IP8|1|1A|G|1336
6IP8|1|1A|A|1337
6IP8|1|1A|G|1338
6IP8|1|1A|U|1339
6IP8|1|1A|C|1340
*
6IP8|1|1A|G|1516
6IP8|1|1A|G|1517
6IP8|1|1A|A|1518
6IP8|1|1A|C|1519
*
6IP8|1|1A|G|1658
6IP8|1|1A|U|1659
6IP8|1|1A|U|1660
6IP8|1|1A|C|1661
*
6IP8|1|1A|G|2288
6IP8|1|1A|C|2289
6IP8|1|1A|C|2290
*
6IP8|1|1A|G|2345
6IP8|1|1A|C|2346
6IP8|1|1A|A|2347
6IP8|1|1A|G|2348
6IP8|1|1A|A|2349
6IP8|1|1A|U|2350
6IP8|1|1A|C|2351
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 1F
- 60S ribosomal protein L4
- Chain 2F
- 60S ribosomal protein L13
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2Y
- 60S ribosomal protein L32
- Chain 2k
- 60S ribosomal protein L28
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