J5_6KE6_002
3D structure
- PDB id
- 6KE6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 6KE6|1|SA|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6KE6_002 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.4443
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6KE6|1|SA|C|31
6KE6|1|SA|U|32
6KE6|1|SA|U|33
6KE6|1|SA|G|34
6KE6|1|SA|U|35
*
6KE6|1|SA|A|473
6KE6|1|SA|A|474
6KE6|1|SA|A|475
6KE6|1|SA|U|476
6KE6|1|SA|A|477
6KE6|1|SA|A|478
6KE6|1|SA|C|479
*
6KE6|1|SA|G|509
6KE6|1|SA|G|510
6KE6|1|SA|A|511
6KE6|1|SA|A|512
6KE6|1|SA|U|513
6KE6|1|SA|G|514
*
6KE6|1|SA|C|543
6KE6|1|SA|A|544
6KE6|1|SA|A|545
6KE6|1|SA|U|546
*
6KE6|1|SA|A|592
6KE6|1|SA|U|593
6KE6|1|SA|A|594
6KE6|1|SA|G|595
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain 5H
- Something about silencing protein 10
- Chain RB
- U3 small nucleolar ribonucleoprotein protein LCP5
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain SK
- 40S ribosomal protein S9-A
- Chain SY
- 40S ribosomal protein S23-A
Coloring options: