3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
6LKQ|1|t|U|1758, 6LKQ|1|t|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6LKQ_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0782
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6LKQ|1|t|G|1674
6LKQ|1|t|C|1675
6LKQ|1|t|A|1676
6LKQ|1|t|A|1677
6LKQ|1|t|A|1678
6LKQ|1|t|A|1679
6LKQ|1|t|U|1680
6LKQ|1|t|G|1681
6LKQ|1|t|G|1682
*
6LKQ|1|t|C|1706
6LKQ|1|t|G|1707
*
6LKQ|1|t|U|1751
6LKQ|1|t|C|1752
*
6LKQ|1|t|G|1756
6LKQ|1|t|A|1757
6LKQ|1|t|U|1758
6LKQ|1|t|A|1759
6LKQ|1|t|C|1760
6LKQ|1|t|C|1761
6LKQ|1|t|A|1762
6LKQ|1|t|G|1763
6LKQ|1|t|C|1764
*
6LKQ|1|t|G|1988
6LKQ|1|t|G|1989
6LKQ|1|t|C|1990

Current chains

Chain t
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L14
Chain 6
50S ribosomal protein L19
Chain V
50S ribosomal protein L3
Chain s
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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