J5_6M62_002
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6M62|1|1|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6M62_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0756
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6M62|1|1|G|658
6M62|1|1|G|659
6M62|1|1|A|660
6M62|1|1|G|661
6M62|1|1|U|662
6M62|1|1|C|663
*
6M62|1|1|G|799
6M62|1|1|G|800
6M62|1|1|A|801
6M62|1|1|C|802
*
6M62|1|1|G|941
6M62|1|1|U|942
6M62|1|1|U|943
6M62|1|1|C|944
*
6M62|1|1|G|1375
6M62|1|1|C|1376
*
6M62|1|1|G|1431
6M62|1|1|C|1432
6M62|1|1|A|1433
6M62|1|1|G|1434
6M62|1|1|A|1435
6M62|1|1|U|1436
6M62|1|1|C|1437
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain e
- 60S ribosomal protein L32
Coloring options: