J5_6MKN_002

3D structure

PDB id

6MKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

6MKN|1|A|A|109, 6MKN|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6MKN_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.07

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6MKN|1|A|C|58
6MKN|1|A|A|59
6MKN|1|A|A|60
6MKN|1|A|G|61
*
6MKN|1|A|C|106
6MKN|1|A|G|107
6MKN|1|A|G|108
6MKN|1|A|A|109
6MKN|1|A|C|110
6MKN|1|A|G|111
6MKN|1|A|G|112
6MKN|1|A|G|113
*
6MKN|1|A|C|314
6MKN|1|A|A|315
6MKN|1|A|G|316
*
6MKN|1|A|C|337
6MKN|1|A|A|338
6MKN|1|A|C|339
*
6MKN|1|A|G|350
6MKN|1|A|G|351
6MKN|1|A|C|352
6MKN|1|A|A|353
6MKN|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20