J5_6MPI_001
3D structure
- PDB id
- 6MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6MPI|1|A|A|109, 6MPI|1|A|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6MPI_001 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0627
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6MPI|1|A|C|58
6MPI|1|A|A|59
6MPI|1|A|A|60
6MPI|1|A|G|61
*
6MPI|1|A|C|106
6MPI|1|A|G|107
6MPI|1|A|G|108
6MPI|1|A|A|109
6MPI|1|A|C|110
6MPI|1|A|G|111
6MPI|1|A|G|112
6MPI|1|A|G|113
*
6MPI|1|A|C|314
6MPI|1|A|A|315
6MPI|1|A|G|316
*
6MPI|1|A|C|337
6MPI|1|A|A|338
6MPI|1|A|C|339
*
6MPI|1|A|G|350
6MPI|1|A|G|351
6MPI|1|A|C|352
6MPI|1|A|A|353
6MPI|1|A|G|354
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
Coloring options: