J5_6MTD_006
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 6MTD|1|9|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6MTD_006 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.0872
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6MTD|1|9|C|30
6MTD|1|9|U|31
6MTD|1|9|U|32
6MTD|1|9|G|33
6MTD|1|9|U|34
*
6MTD|1|9|A|521
6MTD|1|9|A|522
6MTD|1|9|A|523
6MTD|1|9|U|524
6MTD|1|9|A|525
6MTD|1|9|A|526
6MTD|1|9|C|527
*
6MTD|1|9|G|558
6MTD|1|9|G|559
6MTD|1|9|A|560
6MTD|1|9|A|561
6MTD|1|9|U|562
6MTD|1|9|G|563
*
6MTD|1|9|C|592
6MTD|1|9|C|593
6MTD|1|9|A|594
6MTD|1|9|U|595
*
6MTD|1|9|A|641
6MTD|1|9|U|642
6MTD|1|9|A|643
6MTD|1|9|G|644
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain JJ
- uS4
- Chain XX
- uS12
- Chain ee
- eS30
Coloring options: