J5_6N1D_006

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6N1D|1|A23S|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6N1D_006 not in the Motif Atlas

Homologous match to J5_9DFE_004

Geometric discrepancy: 0.1396

The information below is about J5_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6N1D|1|A23S|C|584
6N1D|1|A23S|G|585
6N1D|1|A23S|A|586
6N1D|1|A23S|C|587
6N1D|1|A23S|U|588
6N1D|1|A23S|C|589
*
6N1D|1|A23S|G|668
6N1D|1|A23S|G|669
6N1D|1|A23S|A|670
6N1D|1|A23S|C|671
*
6N1D|1|A23S|G|809
6N1D|1|A23S|U|810
6N1D|1|A23S|U|811
6N1D|1|A23S|C|812
*
6N1D|1|A23S|G|1195
6N1D|1|A23S|C|1196
*
6N1D|1|A23S|G|1250
6N1D|1|A23S|C|1251
6N1D|1|A23S|G|1252
6N1D|1|A23S|A|1253
6N1D|1|A23S|A|1254
6N1D|1|A23S|U|1255
6N1D|1|A23S|G|1256

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL04

50S ribosomal protein L4

Chain AL15

50S ribosomal protein L15

Chain AL20

50S ribosomal protein L20

Chain AL21

50S ribosomal protein L21

Chain AL35

50S ribosomal protein L35