3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCAAGUUGG*UG*CC*GUGAACAGG*CGC
Length
25 nucleotides
Bulged bases
6N1D|1|A23S|G|1758, 6N1D|1|A23S|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6N1D_007 not in the Motif Atlas
Homologous match to J5_7A0S_005
Geometric discrepancy: 0.2285
The information below is about J5_7A0S_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6N1D|1|A23S|G|1674
6N1D|1|A23S|C|1675
6N1D|1|A23S|A|1676
6N1D|1|A23S|A|1677
6N1D|1|A23S|G|1678
6N1D|1|A23S|U|1679
6N1D|1|A23S|U|1680
6N1D|1|A23S|G|1681
6N1D|1|A23S|G|1682
*
6N1D|1|A23S|U|1706
6N1D|1|A23S|G|1707
*
6N1D|1|A23S|C|1751
6N1D|1|A23S|C|1752
*
6N1D|1|A23S|G|1756
6N1D|1|A23S|U|1757
6N1D|1|A23S|G|1758
6N1D|1|A23S|A|1759
6N1D|1|A23S|A|1760
6N1D|1|A23S|C|1761
6N1D|1|A23S|A|1762
6N1D|1|A23S|G|1763
6N1D|1|A23S|G|1764
*
6N1D|1|A23S|C|1988
6N1D|1|A23S|G|1989
6N1D|1|A23S|C|1990

Current chains

Chain A23S
23S rRNA

Nearby chains

Chain A16S
Small subunit ribosomal RNA; SSU rRNA
Chain AL03
50S ribosomal protein L3
Chain AL14
50S ribosomal protein L14
Chain AL19
50S ribosomal protein L19

Coloring options:


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