J5_6N1D_009

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

6N1D|1|A23S|U|2076, 6N1D|1|A23S|G|2428, 6N1D|1|A23S|G|2429, 6N1D|1|A23S|A|2430, 6N1D|1|A23S|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6N1D_009 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.1302

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6N1D|1|A23S|U|2074
6N1D|1|A23S|U|2075
6N1D|1|A23S|U|2076
6N1D|1|A23S|A|2077
*
6N1D|1|A23S|U|2243
6N1D|1|A23S|U|2244
6N1D|1|A23S|U|2245
6N1D|1|A23S|G|2246
*
6N1D|1|A23S|C|2258
6N1D|1|A23S|G|2259
*
6N1D|1|A23S|C|2281
6N1D|1|A23S|G|2282
*
6N1D|1|A23S|C|2427
6N1D|1|A23S|G|2428
6N1D|1|A23S|G|2429
6N1D|1|A23S|A|2430
6N1D|1|A23S|U|2431
6N1D|1|A23S|A|2432
6N1D|1|A23S|A|2433
6N1D|1|A23S|A|2434
6N1D|1|A23S|A|2435

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL15

50S ribosomal protein L15

Chain AL27

50S ribosomal protein L27

Chain AL28

50S ribosomal protein L28

Chain APTN

Transfer RNA; tRNA