J5_6N1D_011

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

6N1D|1|B16S|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6N1D_011 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1292

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6N1D|1|B16S|C|58
6N1D|1|B16S|A|59
6N1D|1|B16S|A|60
6N1D|1|B16S|G|61
*
6N1D|1|B16S|C|106
6N1D|1|B16S|G|107
6N1D|1|B16S|G|108
6N1D|1|B16S|A|109
6N1D|1|B16S|C|110
6N1D|1|B16S|G|111
6N1D|1|B16S|G|112
6N1D|1|B16S|G|113
*
6N1D|1|B16S|C|314
6N1D|1|B16S|A|315
6N1D|1|B16S|G|316
*
6N1D|1|B16S|C|337
6N1D|1|B16S|A|338
6N1D|1|B16S|C|339
*
6N1D|1|B16S|G|350
6N1D|1|B16S|G|351
6N1D|1|B16S|C|352
6N1D|1|B16S|A|353
6N1D|1|B16S|G|354

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BL14

50S ribosomal protein L14

Chain BL19

50S ribosomal protein L19

Chain BS16

30S ribosomal protein S16

Chain BS20

30S ribosomal protein S20