J5_6N1D_011
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6N1D|1|B16S|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6N1D_011 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1292
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6N1D|1|B16S|C|58
6N1D|1|B16S|A|59
6N1D|1|B16S|A|60
6N1D|1|B16S|G|61
*
6N1D|1|B16S|C|106
6N1D|1|B16S|G|107
6N1D|1|B16S|G|108
6N1D|1|B16S|A|109
6N1D|1|B16S|C|110
6N1D|1|B16S|G|111
6N1D|1|B16S|G|112
6N1D|1|B16S|G|113
*
6N1D|1|B16S|C|314
6N1D|1|B16S|A|315
6N1D|1|B16S|G|316
*
6N1D|1|B16S|C|337
6N1D|1|B16S|A|338
6N1D|1|B16S|C|339
*
6N1D|1|B16S|G|350
6N1D|1|B16S|G|351
6N1D|1|B16S|C|352
6N1D|1|B16S|A|353
6N1D|1|B16S|G|354
Current chains
- Chain B16S
- 16S rRNA
Nearby chains
- Chain BL14
- 50S ribosomal protein L14
- Chain BL19
- 50S ribosomal protein L19
- Chain BS16
- 30S ribosomal protein S16
- Chain BS20
- 30S ribosomal protein S20
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