J5_6N8J_009

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

6N8J|1|1|U|719, 6N8J|1|1|A|784, 6N8J|1|1|G|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6N8J_009 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.1011

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_23272.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6N8J|1|1|C|675
6N8J|1|1|G|676
6N8J|1|1|A|677
6N8J|1|1|G|678
*
6N8J|1|1|C|702
6N8J|1|1|G|703
6N8J|1|1|U|704
6N8J|1|1|A|705
6N8J|1|1|A|706
*
6N8J|1|1|U|713
6N8J|1|1|G|714
6N8J|1|1|A|715
6N8J|1|1|A|716
6N8J|1|1|C|717
6N8J|1|1|G|718
6N8J|1|1|U|719
6N8J|1|1|A|720
6N8J|1|1|G|721
*
6N8J|1|1|C|749
6N8J|1|1|G|750
6N8J|1|1|A|751
*
6N8J|1|1|U|782
6N8J|1|1|A|783
6N8J|1|1|A|784
6N8J|1|1|G|785
6N8J|1|1|A|786
6N8J|1|1|G|787

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain L

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L18-A

Chain a

60S ribosomal protein L28

Chain i

60S ribosomal protein L36-A

Chain o

60S ribosomal protein L29