J5_6N9E_018

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6N9E|1|1A|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6N9E_018 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0941

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6N9E|1|1A|C|46
6N9E|1|1A|G|47
6N9E|1|1A|A|48
6N9E|1|1A|U|49
6N9E|1|1A|G|50
6N9E|1|1A|A|51
6N9E|1|1A|A|52
6N9E|1|1A|G|53
*
6N9E|1|1A|C|114
6N9E|1|1A|G|115
6N9E|1|1A|A|116
6N9E|1|1A|A|117
6N9E|1|1A|U|118
6N9E|1|1A|G|119
*
6N9E|1|1A|C|128
6N9E|1|1A|G|129
*
6N9E|1|1A|C|148
6N9E|1|1A|A|149
6N9E|1|1A|C|150
*
6N9E|1|1A|G|165
6N9E|1|1A|G|166
6N9E|1|1A|G|167

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S Ribosomal Protein L23