J5_6ND6_010

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6ND6|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ND6_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0839

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ND6|1|2A|C|47
6ND6|1|2A|G|48
6ND6|1|2A|A|49
6ND6|1|2A|U|50
6ND6|1|2A|G|51
6ND6|1|2A|A|52
6ND6|1|2A|A|53
6ND6|1|2A|G|54
*
6ND6|1|2A|C|116
6ND6|1|2A|G|117
6ND6|1|2A|A|118
6ND6|1|2A|A|119
6ND6|1|2A|U|120
6ND6|1|2A|G|121
*
6ND6|1|2A|C|130
6ND6|1|2A|G|131
*
6ND6|1|2A|C|148
6ND6|1|2A|A|149
6ND6|1|2A|C|150
*
6ND6|1|2A|G|176
6ND6|1|2A|G|177
6ND6|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23