J5_6ND6_019
3D structure
- PDB id
- 6ND6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6ND6|1|2a|A|109, 6ND6|1|2a|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ND6_019 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0994
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ND6|1|2a|C|58
6ND6|1|2a|A|59
6ND6|1|2a|A|60
6ND6|1|2a|G|61
*
6ND6|1|2a|C|106
6ND6|1|2a|G|107
6ND6|1|2a|G|108
6ND6|1|2a|A|109
6ND6|1|2a|C|110
6ND6|1|2a|G|111
6ND6|1|2a|G|112
6ND6|1|2a|G|113
*
6ND6|1|2a|C|314
6ND6|1|2a|A|315
6ND6|1|2a|G|316
*
6ND6|1|2a|C|337
6ND6|1|2a|A|338
6ND6|1|2a|C|339
*
6ND6|1|2a|G|350
6ND6|1|2a|G|351
6ND6|1|2a|C|352
6ND6|1|2a|A|353
6ND6|1|2a|G|354
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2O
- 50S ribosomal protein L14
- Chain 2T
- 50S ribosomal protein L19
- Chain 2p
- 30S ribosomal protein S16
- Chain 2t
- 30S ribosomal protein S20
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