3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
CAG*CGUGC*GAG*CA*UG
Length
15 nucleotides
Bulged bases
6NDK|1|RA|A|532, 6NDK|1|RA|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6NDK_004 not in the Motif Atlas
Homologous match to J5_9DFE_003
Geometric discrepancy: 0.1041
The information below is about J5_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6NDK|1|RA|C|531
6NDK|1|RA|A|532
6NDK|1|RA|G|533
*
6NDK|1|RA|C|560
6NDK|1|RA|G|561
6NDK|1|RA|U|562
6NDK|1|RA|G|563
6NDK|1|RA|C|564
*
6NDK|1|RA|G|577
6NDK|1|RA|A|578
6NDK|1|RA|G|579
*
6NDK|1|RA|C|1261
6NDK|1|RA|A|1262
*
6NDK|1|RA|U|2017
6NDK|1|RA|G|2018

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RF
50S ribosomal protein L4
Chain RU
50S ribosomal protein L20
Chain RV
50S ribosomal protein L21
Chain RW
50S ribosomal protein L22

Coloring options:


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