3D structure

PDB id
6NUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6NUO|1|QA|A|109, 6NUO|1|QA|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6NUO_002 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.0939
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6NUO|1|QA|C|58
6NUO|1|QA|A|59
6NUO|1|QA|A|60
6NUO|1|QA|G|61
*
6NUO|1|QA|C|106
6NUO|1|QA|G|107
6NUO|1|QA|G|108
6NUO|1|QA|A|109
6NUO|1|QA|C|110
6NUO|1|QA|G|111
6NUO|1|QA|G|112
6NUO|1|QA|G|113
*
6NUO|1|QA|C|314
6NUO|1|QA|A|315
6NUO|1|QA|G|316
*
6NUO|1|QA|C|337
6NUO|1|QA|A|338
6NUO|1|QA|C|339
*
6NUO|1|QA|G|350
6NUO|1|QA|G|351
6NUO|1|QA|C|352
6NUO|1|QA|A|353
6NUO|1|QA|G|354

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QP
30S ribosomal protein S16
Chain QT
30S ribosomal protein S20
Chain RO
50S ribosomal protein L14
Chain RT
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3166 s