3D structure

PDB id
6NUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGACUC*GGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
6NUO|1|RA|U|1301
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6NUO_005 not in the Motif Atlas
Homologous match to J5_9DFE_004
Geometric discrepancy: 0.0732
The information below is about J5_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6NUO|1|RA|C|607
6NUO|1|RA|G|608
6NUO|1|RA|A|609
6NUO|1|RA|C|610
6NUO|1|RA|U|611
6NUO|1|RA|C|612
*
6NUO|1|RA|G|715
6NUO|1|RA|G|716
6NUO|1|RA|A|717
6NUO|1|RA|C|718
*
6NUO|1|RA|G|856
6NUO|1|RA|U|857
6NUO|1|RA|U|858
6NUO|1|RA|C|859
*
6NUO|1|RA|G|1240
6NUO|1|RA|C|1241
*
6NUO|1|RA|G|1296
6NUO|1|RA|C|1297
6NUO|1|RA|G|1298
6NUO|1|RA|A|1299
6NUO|1|RA|A|1300
6NUO|1|RA|U|1301
6NUO|1|RA|G|1302

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R8
50S ribosomal protein L35
Chain RF
50S ribosomal protein L4
Chain RP
50S ribosomal protein L15
Chain RU
50S ribosomal protein L20
Chain RV
50S ribosomal protein L21

Coloring options:


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