J5_6O8W_007
3D structure
- PDB id
- 6O8W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6O8W|1|A|U|2090, 6O8W|1|A|G|2442, 6O8W|1|A|G|2443, 6O8W|1|A|A|2444, 6O8W|1|A|U|2445
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6O8W_007 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.122
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6O8W|1|A|U|2088
6O8W|1|A|U|2089
6O8W|1|A|U|2090
6O8W|1|A|A|2091
*
6O8W|1|A|U|2257
6O8W|1|A|U|2258
6O8W|1|A|U|2259
6O8W|1|A|G|2260
*
6O8W|1|A|C|2272
6O8W|1|A|G|2273
*
6O8W|1|A|C|2295
6O8W|1|A|G|2296
*
6O8W|1|A|C|2441
6O8W|1|A|G|2442
6O8W|1|A|G|2443
6O8W|1|A|A|2444
6O8W|1|A|U|2445
6O8W|1|A|A|2446
6O8W|1|A|A|2447
6O8W|1|A|A|2448
6O8W|1|A|A|2449
Current chains
- Chain A
- 50S subunit
Nearby chains
- Chain 5
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L28
- Chain u
- Transfer RNA; tRNA
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