J5_6O8X_001

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

6O8X|1|A|U|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6O8X_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1167

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6O8X|1|A|C|48
6O8X|1|A|G|49
6O8X|1|A|A|50
6O8X|1|A|U|51
6O8X|1|A|G|52
6O8X|1|A|A|53
6O8X|1|A|A|54
6O8X|1|A|G|55
*
6O8X|1|A|C|116
6O8X|1|A|G|117
6O8X|1|A|A|118
6O8X|1|A|A|119
6O8X|1|A|U|120
6O8X|1|A|G|121
*
6O8X|1|A|C|130
6O8X|1|A|A|131
*
6O8X|1|A|U|150
6O8X|1|A|A|151
6O8X|1|A|C|152
*
6O8X|1|A|G|178
6O8X|1|A|A|179
6O8X|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain U

50S ribosomal protein L23