J5_6O90_009
3D structure
- PDB id
- 6O90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6O90|1|a|A|114, 6O90|1|a|C|367
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6O90_009 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1321
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6O90|1|a|C|55
6O90|1|a|A|56
6O90|1|a|A|57
6O90|1|a|G|58
*
6O90|1|a|C|111
6O90|1|a|G|112
6O90|1|a|G|113
6O90|1|a|A|114
6O90|1|a|C|115
6O90|1|a|G|116
6O90|1|a|G|117
6O90|1|a|G|118
*
6O90|1|a|C|329
6O90|1|a|A|330
6O90|1|a|C|331
*
6O90|1|a|G|352
6O90|1|a|A|353
6O90|1|a|C|354
*
6O90|1|a|G|365
6O90|1|a|G|366
6O90|1|a|C|367
6O90|1|a|A|368
6O90|1|a|G|369
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L14
- Chain Q
- 50S ribosomal protein L19
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
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