3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGACUC*GGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
6OF6|1|YA|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6OF6_015 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0768
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6OF6|1|YA|C|584
6OF6|1|YA|G|585
6OF6|1|YA|A|586
6OF6|1|YA|C|587
6OF6|1|YA|U|588
6OF6|1|YA|C|589
*
6OF6|1|YA|G|668
6OF6|1|YA|G|669
6OF6|1|YA|A|670
6OF6|1|YA|C|671
*
6OF6|1|YA|G|809
6OF6|1|YA|U|810
6OF6|1|YA|U|811
6OF6|1|YA|C|812
*
6OF6|1|YA|G|1195
6OF6|1|YA|C|1196
*
6OF6|1|YA|G|1250
6OF6|1|YA|C|1251
6OF6|1|YA|G|1252
6OF6|1|YA|A|1253
6OF6|1|YA|A|1254
6OF6|1|YA|U|1255
6OF6|1|YA|G|1256

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y8
50S ribosomal protein L35
Chain YF
50S ribosomal protein L4
Chain YP
50S ribosomal protein L15
Chain YU
50S ribosomal protein L20
Chain YV
50S ribosomal protein L21

Coloring options:


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