3D structure

PDB id
6OG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
6OG7|1|1|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6OG7_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0755
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6OG7|1|1|C|584
6OG7|1|1|G|585
6OG7|1|1|A|586
6OG7|1|1|C|587
6OG7|1|1|U|588
6OG7|1|1|U|589
*
6OG7|1|1|A|668
6OG7|1|1|G|669
6OG7|1|1|A|670
6OG7|1|1|C|671
*
6OG7|1|1|G|809
6OG7|1|1|U|810
6OG7|1|1|U|811
6OG7|1|1|C|812
*
6OG7|1|1|G|1195
6OG7|1|1|C|1196
*
6OG7|1|1|G|1250
6OG7|1|1|C|1251
6OG7|1|1|G|1252
6OG7|1|1|A|1253
6OG7|1|1|A|1254
6OG7|1|1|U|1255
6OG7|1|1|G|1256

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L35
Chain d
50S ribosomal protein L4
Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21

Coloring options:


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