3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
6OGG|1|3|A|109, 6OGG|1|3|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6OGG_009 not in the Motif Atlas
Homologous match to J5_6CZR_021
Geometric discrepancy: 0.1953
The information below is about J5_6CZR_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.5
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6OGG|1|3|C|58
6OGG|1|3|A|59
6OGG|1|3|A|60
6OGG|1|3|G|61
*
6OGG|1|3|C|106
6OGG|1|3|G|107
6OGG|1|3|G|108
6OGG|1|3|A|109
6OGG|1|3|C|110
6OGG|1|3|G|111
6OGG|1|3|G|112
6OGG|1|3|G|113
*
6OGG|1|3|C|314
6OGG|1|3|A|315
6OGG|1|3|C|316
*
6OGG|1|3|G|337
6OGG|1|3|A|338
6OGG|1|3|C|339
*
6OGG|1|3|G|350
6OGG|1|3|G|351
6OGG|1|3|C|352
6OGG|1|3|A|353
6OGG|1|3|G|354

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain U
30S ribosomal protein S16
Chain Y
30S ribosomal protein S20
Chain k
50S ribosomal protein L14
Chain p
50S ribosomal protein L19

Coloring options:


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