J5_6OLF_008
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6OLF|1|t|U|3892, 6OLF|1|t|G|3893, 6OLF|1|t|A|4338, 6OLF|1|t|G|4339, 6OLF|1|t|A|4340, 6OLF|1|t|A|4341, 6OLF|1|t|A|4342
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OLF_008 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3189
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OLF|1|t|U|3891
6OLF|1|t|U|3892
6OLF|1|t|G|3893
6OLF|1|t|A|3894
*
6OLF|1|t|U|4150
6OLF|1|t|U|4151
6OLF|1|t|U|4152
6OLF|1|t|G|4153
*
6OLF|1|t|C|4166
6OLF|1|t|A|4167
*
6OLF|1|t|U|4189
6OLF|1|t|G|4190
*
6OLF|1|t|C|4337
6OLF|1|t|A|4338
6OLF|1|t|G|4339
6OLF|1|t|A|4340
6OLF|1|t|A|4341
6OLF|1|t|A|4342
6OLF|1|t|A|4343
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain O
- 60S ribosomal protein L15
- Chain R
- 60S ribosomal protein L18
- Chain U
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L27a
- Chain c
- 60S ribosomal protein L29
- Chain p
- 60S ribosomal protein L36a
- Chain v
- Transfer RNA; tRNA
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