J5_6OM7_007
3D structure
- PDB id
- 6OM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6OM7|1|t|G|3591, 6OM7|1|t|G|3596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OM7_007 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1557
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6OM7|1|t|G|2834
6OM7|1|t|C|2835
6OM7|1|t|A|2836
6OM7|1|t|A|2837
6OM7|1|t|G|2838
6OM7|1|t|C|2839
6OM7|1|t|C|2840
6OM7|1|t|G|2841
6OM7|1|t|G|2842
*
6OM7|1|t|U|2866
6OM7|1|t|G|2867
*
6OM7|1|t|U|3584
6OM7|1|t|G|3585
*
6OM7|1|t|C|3589
6OM7|1|t|G|3590
6OM7|1|t|G|3591
6OM7|1|t|A|3592
6OM7|1|t|C|3593
6OM7|1|t|C|3594
6OM7|1|t|A|3595
6OM7|1|t|G|3596
6OM7|1|t|G|3597
*
6OM7|1|t|C|3806
6OM7|1|t|A|3807
6OM7|1|t|C|3808
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain S
- 60S ribosomal protein L19
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain W
- 60S ribosomal protein L23
- Chain X
- 60S ribosomal protein L24
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