J5_6OPE_003

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6OPE|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OPE_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0723

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6OPE|1|RA|C|47
6OPE|1|RA|G|48
6OPE|1|RA|A|49
6OPE|1|RA|U|50
6OPE|1|RA|G|51
6OPE|1|RA|A|52
6OPE|1|RA|A|53
6OPE|1|RA|G|54
*
6OPE|1|RA|C|116
6OPE|1|RA|G|117
6OPE|1|RA|A|118
6OPE|1|RA|A|119
6OPE|1|RA|U|120
6OPE|1|RA|G|121
*
6OPE|1|RA|C|130
6OPE|1|RA|G|131
*
6OPE|1|RA|C|148
6OPE|1|RA|A|149
6OPE|1|RA|C|150
*
6OPE|1|RA|G|176
6OPE|1|RA|G|177
6OPE|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23