J5_6OXA_003

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6OXA|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OXA_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0881

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6OXA|1|RA|C|47
6OXA|1|RA|G|48
6OXA|1|RA|A|49
6OXA|1|RA|U|50
6OXA|1|RA|G|51
6OXA|1|RA|A|52
6OXA|1|RA|A|53
6OXA|1|RA|G|54
*
6OXA|1|RA|C|116
6OXA|1|RA|G|117
6OXA|1|RA|A|118
6OXA|1|RA|A|119
6OXA|1|RA|U|120
6OXA|1|RA|G|121
*
6OXA|1|RA|C|130
6OXA|1|RA|G|131
*
6OXA|1|RA|C|148
6OXA|1|RA|A|149
6OXA|1|RA|C|150
*
6OXA|1|RA|G|176
6OXA|1|RA|G|177
6OXA|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23