J5_6P4G_001

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

6P4G|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6P4G_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0885

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6P4G|1|2|C|30
6P4G|1|2|U|31
6P4G|1|2|U|32
6P4G|1|2|G|33
6P4G|1|2|U|34
*
6P4G|1|2|A|521
6P4G|1|2|A|522
6P4G|1|2|A|523
6P4G|1|2|U|524
6P4G|1|2|A|525
6P4G|1|2|A|526
6P4G|1|2|C|527
*
6P4G|1|2|G|558
6P4G|1|2|G|559
6P4G|1|2|A|560
6P4G|1|2|A|561
6P4G|1|2|U|562
6P4G|1|2|G|563
*
6P4G|1|2|C|592
6P4G|1|2|C|593
6P4G|1|2|A|594
6P4G|1|2|U|595
*
6P4G|1|2|A|641
6P4G|1|2|U|642
6P4G|1|2|A|643
6P4G|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30