J5_6P4H_001

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

6P4H|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6P4H_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0805

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6P4H|1|2|C|30
6P4H|1|2|U|31
6P4H|1|2|U|32
6P4H|1|2|G|33
6P4H|1|2|U|34
*
6P4H|1|2|A|521
6P4H|1|2|A|522
6P4H|1|2|A|523
6P4H|1|2|U|524
6P4H|1|2|A|525
6P4H|1|2|A|526
6P4H|1|2|C|527
*
6P4H|1|2|G|558
6P4H|1|2|G|559
6P4H|1|2|A|560
6P4H|1|2|A|561
6P4H|1|2|U|562
6P4H|1|2|G|563
*
6P4H|1|2|C|592
6P4H|1|2|C|593
6P4H|1|2|A|594
6P4H|1|2|U|595
*
6P4H|1|2|A|641
6P4H|1|2|U|642
6P4H|1|2|A|643
6P4H|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30