J5_6P5I_001

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

6P5I|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6P5I_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0974

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6P5I|1|2|C|30
6P5I|1|2|U|31
6P5I|1|2|U|32
6P5I|1|2|G|33
6P5I|1|2|U|34
*
6P5I|1|2|A|521
6P5I|1|2|A|522
6P5I|1|2|A|523
6P5I|1|2|U|524
6P5I|1|2|A|525
6P5I|1|2|A|526
6P5I|1|2|C|527
*
6P5I|1|2|G|558
6P5I|1|2|G|559
6P5I|1|2|A|560
6P5I|1|2|A|561
6P5I|1|2|U|562
6P5I|1|2|G|563
*
6P5I|1|2|C|592
6P5I|1|2|C|593
6P5I|1|2|A|594
6P5I|1|2|U|595
*
6P5I|1|2|A|641
6P5I|1|2|U|642
6P5I|1|2|A|643
6P5I|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30