J5_6P5J_001
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 6P5J|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6P5J_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1111
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6P5J|1|5|G|19
6P5J|1|5|U|20
6P5J|1|5|G|21
*
6P5J|1|8|C|35
6P5J|1|8|G|36
6P5J|1|8|A|37
6P5J|1|8|U|38
6P5J|1|8|G|39
6P5J|1|8|A|40
6P5J|1|8|A|41
6P5J|1|8|G|42
*
6P5J|1|8|C|101
6P5J|1|8|G|102
6P5J|1|8|A|103
6P5J|1|8|A|104
6P5J|1|8|C|105
6P5J|1|8|G|106
*
6P5J|1|8|C|113
6P5J|1|8|G|114
*
6P5J|1|8|U|136
6P5J|1|8|A|137
6P5J|1|8|C|138
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain AN
- eL15
- Chain AX
- eL23
- Chain Ah
- eL35
- Chain Aj
- eL37
- Chain Al
- eL39
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