J5_6P5J_006
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6P5J|1|5|G|3922, 6P5J|1|5|A|4376, 6P5J|1|5|G|4377, 6P5J|1|5|A|4378, 6P5J|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6P5J_006 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3329
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5J|1|5|U|3920
6P5J|1|5|U|3921
6P5J|1|5|G|3922
6P5J|1|5|A|3923
*
6P5J|1|5|U|4188
6P5J|1|5|U|4189
6P5J|1|5|U|4190
6P5J|1|5|G|4191
*
6P5J|1|5|C|4204
6P5J|1|5|A|4205
*
6P5J|1|5|U|4227
6P5J|1|5|G|4228
*
6P5J|1|5|C|4375
6P5J|1|5|A|4376
6P5J|1|5|G|4377
6P5J|1|5|A|4378
6P5J|1|5|A|4379
6P5J|1|5|A|4380
6P5J|1|5|A|4381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AA
- uL2
- Chain AN
- eL15
- Chain AQ
- eL18
- Chain AT
- eL21
- Chain Aa
- uL15
- Chain Ab
- eL29
- Chain Ao
- eL42
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