J5_6PC6_003

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6PC6|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PC6_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0723

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6PC6|1|I|C|584
6PC6|1|I|G|585
6PC6|1|I|A|586
6PC6|1|I|C|587
6PC6|1|I|U|588
6PC6|1|I|U|589
*
6PC6|1|I|A|668
6PC6|1|I|G|669
6PC6|1|I|A|670
6PC6|1|I|C|671
*
6PC6|1|I|G|809
6PC6|1|I|U|810
6PC6|1|I|U|811
6PC6|1|I|C|812
*
6PC6|1|I|G|1195
6PC6|1|I|C|1196
*
6PC6|1|I|G|1250
6PC6|1|I|C|1251
6PC6|1|I|G|1252
6PC6|1|I|A|1253
6PC6|1|I|A|1254
6PC6|1|I|U|1255
6PC6|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4