J5_6PC7_003

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6PC7|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PC7_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0833

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6PC7|1|I|C|584
6PC7|1|I|G|585
6PC7|1|I|A|586
6PC7|1|I|C|587
6PC7|1|I|U|588
6PC7|1|I|U|589
*
6PC7|1|I|A|668
6PC7|1|I|G|669
6PC7|1|I|A|670
6PC7|1|I|C|671
*
6PC7|1|I|G|809
6PC7|1|I|U|810
6PC7|1|I|U|811
6PC7|1|I|C|812
*
6PC7|1|I|G|1195
6PC7|1|I|C|1196
*
6PC7|1|I|G|1250
6PC7|1|I|C|1251
6PC7|1|I|G|1252
6PC7|1|I|A|1253
6PC7|1|I|A|1254
6PC7|1|I|U|1255
6PC7|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4